BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB031D02SP1|AL429378
(261 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig928 378 e-105
>3x_Contig928
Length = 1948
Score = 378 bits (187), Expect = e-105
Identities = 217/229 (94%), Gaps = 2/229 (0%)
Strand = Plus / Minus
Query: 5 aggttctaaggttgaagagttcaatgttttcacaaagactttgaaagargctataagava 64
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 475 aggttctaaggttgaagagttcaatgttttcacaaagactttgaaagaggctataagaga 416
Query: 65 kgaaattkctttgaattctgaacaagcatatagctccttaccattkttcaacgctaagac 124
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 415 ggaaattgctttgaattctgaacaagcatatagctccttaccattgttcaacgctaagac 356
Query: 125 tctactattcttccagaatgaaaaggagatggaggcgttcgctaaavaacgtgactggag 184
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 355 tctactattcttcgagaatgaaaaggagatggaggcgttcgctaaagaacgtgactggag 296
Query: 185 cstcaaccatgggcgttatcacatttgggaaatcattcaaccccagaca 233
| |||||||| ||||||||||||||| |||||| ||||||| |||||||
Sbjct: 295 cgtcaaccat-ggcgttatcacattt-ggaaatgattcaactccagaca 249
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1454
Number of Sequences: 1807
Number of extensions: 1454
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 261
length of database: 10,358,551
effective HSP length: 15
effective length of query: 246
effective length of database: 10,331,446
effective search space: 2541535716
effective search space used: 2541535716
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.8 bits)
S2: 49 (99.6 bits)